PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0162s0440.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 462aa    MW: 51847.4 Da    PI: 6.1751
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0162s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.61.5e-3331312127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             p+GfrFhPt ee++++yL++k+eg++  ++++i e+ ++y+ +Pwd+p ++++ ++ wyfF++ d k+a gk  nr+tk+g Wk tg
  SapurV1A.0162s0440.1.p   3 PVGFRFHPTVEEIIDYYLANKLEGRDYLVDDHIGEIdHLYQKDPWDIP-EFESADRVWYFFCRLDFKHADGKLINRKTKNGNWKLTG 88 
                             89************************999999****6699********.778899******************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127
                               +++++  ++e++g+k+ Lvf+++   ++k + t Wv+he++
  SapurV1A.0162s0440.1.p  89 MPRDIKRGgTNEVIGTKRNLVFHQKcpASKKLVGTGWVIHEFQ 131
                             ******9866778**********76445666679********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.5732150IPR003441NAC domain
SuperFamilySSF1019411.06E-352148IPR003441NAC domain
PfamPF023653.7E-203131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTPVGFRFHP TVEEIIDYYL ANKLEGRDYL VDDHIGEIDH LYQKDPWDIP EFESADRVWY  60
FFCRLDFKHA DGKLINRKTK NGNWKLTGMP RDIKRGGTNE VIGTKRNLVF HQKCPASKKL  120
VGTGWVIHEF QSRISPPDER ALVLCKLKDR GDKSAADLPN DEGEASLFMG SDFDNNAAET  180
HNREVDELWR LSLINSDEDD INFSLPLQSQ IHLQNSLVGE EDLHLADSFL VFPDEYGSEN  240
AAFSHPSTYT LQSGSENAAF SHPSTYILQS SSHAYEEPAN LYGGHGDLKI ARQLQMAPGD  300
DILLMGASSM GSTTATRHEH IESMQSGGEV IQETRQPLPP LRMPETRQPR PPTPVMAPKF  360
VEREKVSHKD IPFQGMISRS FIPKAEVGIK ESSGIAESDR KIVPVTNPKP RSNDSARKGR  420
FIHHETTISS HRSCPPSVYL LNAVLGVVLF LIMLREALIV H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-19313116139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320907.21e-157hypothetical protein POPTR_0014s10320g
TrEMBLB9I9641e-157B9I964_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10320.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.12e-30NAC domain containing protein 69